NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302140_10928213

Scaffold Ga0302140_10928213


Overview

Basic Information
Taxon OID3300031261 Open in IMG/M
Scaffold IDGa0302140_10928213 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017589Metagenome239Y
F027390Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0302140_109282131F027390N/AYASNIPTLGGIAAGTYPTPGGPNTAGGSGATYLSLNISGNDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA
Ga0302140_109282132F017589N/AMPASLCTAFTELREYVQFQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASPLSALYSFWVSQNAGLTPFAFYNAFDVASGQQIGSNYDPTGNNTQGRVTVV

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