Scaffold Ga0307494_1001242

Overview

Basic Information

• Taxon OID: 3300031252
• Scaffold ID: Ga0307494_1001242
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2016
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F005848	Metagenome / Metatranscriptome	388	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307494_10012421	F005848	N/A	LPVQRTYTATVAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNLIDPAATQLLQYTLVKNGNATSVRAFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTIGALFNGQILVRYGSPLN
Ga0307494_10012422	F004537	AGGAG	MPFSNNIVNNYRINSGNTPLLYPVRVICPPGVTTGVSFPDQFLGRAISLKITNNDAANAASYDYNLNGQPQNLAASAFSTIDNTVVNYLTIIAGAAGTVLVEAQVLPASRSEVPIEVQV