Scaffold Ga0265339_10023029

Overview

Basic Information

• Taxon OID: 3300031249
• Scaffold ID: Ga0265339_10023029
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3603
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265339_100230293	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQAGCLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLGLSPVQRISERRKRRHGTYEERSLIRHSPPVEAI
Ga0265339_100230294	F001596	AGGAG	MSWFHSSTAAVDARSYASPAEIVAGFQDQGNVLGRLAFLITGDHATADRAVVQACEMTLQGNSPFRDWLFEWAKAATITSAISHGTEAIRICEAAYRDRRCPHVEHLSQGDAQERAANLDLILGTDIEELLTELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHALTWLAKLRVKPVAENHDASHATQF
Ga0265339_100230295	F010114	GGAGG	MTIELDDTRLLCTVLRDQAREHLSYADASEVAEGLYKLATRFERPVRELSNITIA