Scaffold Ga0307970_1089738

Overview

Basic Information

• Taxon OID: 3300031243
• Scaffold ID: Ga0307970_1089738
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #712
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 675
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007290	Metagenome	353	Y
F019634	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307970_10897382	F007290	AGGAG	MNYTIALSIAAKATAYLQDNEGSMSDKEAVLSVYALSHALKAIAKHNSVELPPRP
Ga0307970_10897383	F019634	GGAG	MNTLTALINTAASTNTTRFAAQRGIFFDSMSDMVAKLNAEGLTMQQNDGERVLVSNKVWMTRHGVATPVNT