NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307970_1048387

Scaffold Ga0307970_1048387


Overview

Basic Information
Taxon OID3300031243 Open in IMG/M
Scaffold IDGa0307970_1048387 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #712
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F014094Metagenome265Y
F102224Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0307970_10483872F014094N/AMEVLKANTQQYEALQGFKNGIHIIDFTTDADGNHIIGKEVLPDDKFLEIREELEQLEVIIYKSKETEL
Ga0307970_10483873F001408N/AMKNYFKRTRHHLHAGVGITAGFLASLALSWVWLGFRNLEALDKAMWFIAPAFIIGLIWEWRQGKINKMDILVSGIAISTGVYLGGLLF
Ga0307970_10483874F102224N/AMSLVSDNAGVILTAITGAISSVFLFFKGKKARDSNANIEIGKAYELMAKQNNAFIITMTDKI

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