NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265328_10000388

Scaffold Ga0265328_10000388


Overview

Basic Information
Taxon OID3300031239 Open in IMG/M
Scaffold IDGa0265328_10000388 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20581
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026424Metagenome / Metatranscriptome198N
F035981Metagenome / Metatranscriptome171N
F078336Metagenome116Y
F084521Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0265328_1000038817F026424GGAGGMMNLSLAQVKKFGSEIQSLKTKHEKAIQKTNDVIEQGVEATLASATAFGLGIWQTRADHQKLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSMGNGALAAHFHTVGRGVGKEMREKAGLAPVAMSGEGPAEGGSNLSDDALLEMARRRG
Ga0265328_1000038818F035981AGGMRDDDSSGDEILGADEILGADEILGADEVLAGGGDESAGDESSGDESSGDELVGLRLFRRKRKKGARTAAPNPIVQSRLAQQGVIVKTQGYSKGRSQSLGFEFLAIQPGATVDVQGNPQVLFKPKRLVYTGPAGTFVIQDVKIGRSSQFVASGPQSADAYPPTSTVDNMELDTARPGVVITLRIQNVSGVAGDFRATMFGQVAE
Ga0265328_1000038825F078336GGAGMSFYENGMTDVVGGGRLFSVLSPSAIKQEIDSVDHYIRRIDGDVQAHKDKVTDLLRDWHLFVEDWTTFRDGAGWFARTTGATYDKALDYRKRADAWDELVHRRGASTAPVGTTPAPAATGDLVGSLVKLAGIGVAAYVGVSLIQIYKQREKVNDDRSRA
Ga0265328_100003889F084521GGAGMIGELIYSVEVAIVRCPGDGENGAAAGPVEKAVTVRYCEICRRWGANGSTHICWRNWRPRLSELLMELAREGRR
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