NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302324_101980777

Scaffold Ga0302324_101980777


Overview

Basic Information
Taxon OID3300031236 Open in IMG/M
Scaffold IDGa0302324_101980777 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)732
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F061145Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0302324_1019807771F061145GAGGMVAVGLLIGVALMPILIFYAGAAALGRYDGASLGALYASLFVGMRQGSIASWLVFLGPYGLYLLFRALRLWW
Ga0302324_1019807772F001426GGAMPQSVYEAKPWVYISLGALLAVGMMLWSLSAGLWTVWRSLFCFLGAGLAVAGGATLQLRQDYRAKSKWRRRDHSS

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