NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302324_100163204

Scaffold Ga0302324_100163204


Overview

Basic Information
Taxon OID3300031236 Open in IMG/M
Scaffold IDGa0302324_100163204 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3627
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021139Metagenome / Metatranscriptome220Y
F026322Metagenome / Metatranscriptome198Y
F051307Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0302324_1001632043F051307GAGGMAPHPLHALGFEPVAPSLAHLGFEPAMPVGLREPASGRKIVQPTNNPAVNQELASEAIPAYKAQLLEVIRHIQGATLAASRKRKNPSRLAEKIVGEGQPAATVSDYGAAQIAVDSPQAKAAVVAAVKQHFKVLREQDNFAFGDPQYRYRSCSLQLQMPNGSSEELQIVPRPVFEANRQEHHDYKLARNAELAGRSAEAASAAARDLNNRAMERFNSKNGVVPQVVKGAVVKGSRVRLADGAIARVVYVDPNLRIARVRTEDGRNITVRHKHLRRP
Ga0302324_1001632047F021139N/AMKRITLRQATRDDWPRIQQLHREHQAAQGTNYELPWLFGPAIAIALVGVEEHGTIRNCIYVETIAELRFVGCDPKATAFGRREIAGLSYVLKLQGFRWLECFVPRQLKKMIQKPLQRAGFDCVDRELAHFAKDLRGTL
Ga0302324_1001632048F026322GGAGMYSLHQQYLDLASGFHVIELRDQRGNRHLVQLAVGHDACPACGAVHPKDNLGALDPAAAVHQINQALNTSQQQMLIYAAKHGLTVK
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