Scaffold Ga0265330_10004091

Overview

Basic Information

• Taxon OID: 3300031235
• Scaffold ID: Ga0265330_10004091
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7480
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001107	Metagenome / Metatranscriptome	776	Y
F002611	Metagenome / Metatranscriptome	543	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265330_100040913	F001107	N/A	MGQIHGWALFSGRALRVRAIAILPATFLLRTNHDEIYNILWVLVFGFATLNILSLGARRFEQHKSGLSFGEMLAILVVVVSIILLGWEMLYLFHILPIHLTPQ
Ga0265330_100040918	F002611	N/A	VKTYRIERIKSGMKFVCEQCAHSVSTLDFDTRGGNLRTQAATAINDHAIKAHHAPMIVSPSDSQQRSWR