Scaffold Ga0265330_10000107

Overview

Basic Information

• Taxon OID: 3300031235
• Scaffold ID: Ga0265330_10000107
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69658
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (87.30%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011543	Metagenome / Metatranscriptome	290	Y
F059472	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265330_1000010739	F011543	AGGAG	MFDIDTCNLKNSLPVLIGLLVVAQVDLASAFGWPQLLLSLLHLTAANNDLCSGVCAGLGTSIDVLVIFQLVRMWAKRSLQAGREMQRN
Ga0265330_1000010740	F059472	GGAG	MTHPILNRILMLDKVADERVREHQRRSTSAAAIIGTLIAFVMLEYHLLIEHRVPWDLIAVIYAMGLTKVALMRWYHYKN