NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302325_10920865

Scaffold Ga0302325_10920865


Overview

Basic Information
Taxon OID3300031234 Open in IMG/M
Scaffold IDGa0302325_10920865 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1209
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017675Metagenome / Metatranscriptome239Y
F079245Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0302325_109208651F017675GGAGGMTTVRIAHAEPRPGRLANGSFSTRGFLVVLADDLGHRAVPIWMQAEPGDGDLSQILELAARPAGEIVTAGAPEELTARLLRAVGASVTGVDIDVTAADTDALTPQASVARIALCGPAGTRHVTAGLGLGLAM
Ga0302325_109208652F079245GAGGMIPLYIALAVACVAFWKVAAKILAAVALFLIVSGVVMVIQDMHHLR

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