NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302325_10844478

Scaffold Ga0302325_10844478


Overview

Basic Information
Taxon OID3300031234 Open in IMG/M
Scaffold IDGa0302325_10844478 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1283
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052072Metagenome / Metatranscriptome143Y
F062016Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0302325_108444781F062016GGAGMNTFNKLATCTLMMLVLAASAFAQAPGPETTLANLTEGQGTISSSSNPQWDGYSELVLIPGASLMGASSTSTALYIGFTGGTEADIGNMVLYSTLRGNDAVIKATKVTLSGSSDPSIDLTSTSVCPNGAPTATNPCIIRLDTVKAALSTLDDYYFVVYFTLDTNNEKIAGVGQSVEPGALSGFYLYGDQTRIGAKGAIATNENADQPAFFLAYVANE
Ga0302325_108444782F052072N/AVTSNGSWSGYSTLALIPGAGLIPVTNTNTVLYIGFTAGAEADITNMVLYTTPRGSSTISTVTPITLNGISNPSIDLASATVCPIVEISAVNPCIVRLDPVKLTLSALSDYYFVVYFTANDANNSAIGLTSPSFGQSSLRGTYISGDETQLGVGGSIPSTLSFAGQPYSLMYVMND
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