NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302325_10521164

Scaffold Ga0302325_10521164


Overview

Basic Information
Taxon OID3300031234 Open in IMG/M
Scaffold IDGa0302325_10521164 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1787
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008038Metagenome / Metatranscriptome340Y
F071430Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0302325_105211642F008038N/AVVALGHHLGMTSAAEISSLSSTLQDLHDRVSSMAEGALSRGDEDMAHELFSVERSLGGALRRLRRFAQSA
Ga0302325_105211643F071430N/ANGIVPVIPAVAVAEGYRTELRADRIDQFLAGTQIEPFNGESARRTGDLAARCDTTDMAALAVVELADRGNLAVVAQRQTVLREAANQLGHDLVLHAV

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