Scaffold Ga0302325_10493452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302325_10493452

Scaffold Ga0302325_10493452

Overview

Basic Information
Taxon OID	3300031234 Open in IMG/M
Scaffold ID	Ga0302325_10493452 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1854
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004122	Metagenome / Metatranscriptome	452	Y
F015781	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302325_104934522	F004122	N/A	MTEKGLSDTGQRSAELRYEWHSFLGLLPVLDLRPMDLVLYQRCLTAVWRSRKSAISRTDLQQAAGLGFQAETVDFDLLLAQLVREEILEPIVSSPFHFQIRRRNWTNPESAYAADDRLSLSAISREEQAARFRMLGLLDARILNPRLPEKRVQQIREERDELERIYEATWVELENAIGGQAAEAIRESVQETREAGAVQLELPLGKKTTFDLEGEARCNQ
Ga0302325_104934523	F015781	AGG	MNSVVDTIVAAPANSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLVGSNVRIGDDVLVPASTGTATADTEVYIRKPSLRRADVYQVKAGYAALPKLDKREEPFVRVQVADGQLGINAIHIP

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