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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031234 Open in IMG/M |
| Scaffold ID | Ga0302325_10027752 Open in IMG/M |
| Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11726 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Abisko, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007759 | Metagenome / Metatranscriptome | 345 | Y |
| F044615 | Metagenome / Metatranscriptome | 154 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302325_100277525 | F007759 | AGGA | MKRVLILILAITTLAAARDKKSKAQPGPYIFTSKASAHALKVLIVQANAGEGYALDSDDQFQFRFSKPAQMPVIGALFMASSACPGMTTKKVWSYTLAELDGTTKVTVQPVWEYPDDYCKMQTQDLIWSQREEIAAFQAMLDKAPTASAQIPTPSPAPVSPAVAPASTPESVANQQQSAKQHAACLELAKDNPSIICK |
| Ga0302325_100277529 | F044615 | GAG | VPSRAREGSSTSAVVAEKVRTILASKRITLYEASRQSVALYGLSSPYFLPHHLYYDLRSGSFRPSIHQIFALSRISGYRVADWLRVFGFDLEDITRLQIEISSKRTIVLDTSLTDPNERIPWLRNRPLGEPIPSITPLARLVEVEPPKRIASVSQLDRHFIYAKIGAEDALAFPDLTPGSIVRVDPNVTADLVGRQNSGISDRLFLIEHSNGFCCCRIRTLGGGVIVPFDNGLSYAQVELHCPQEARLWGAVDLEFRPLLPGEEAKVPKDLARHWKPQLRPAHEDFGQMLKRTRTRMNLSIREAAAMSRIIAEVLKDDRYATAPSSLSDYELRNIPPRDFHKIITLCSIYGVRFESVMKRMGIDVAEAGTESMPDRYLARAVPTVAAKRGDVANVVPGFIEKLLGEFVEIPLFLRNSLGHFAGSAHVSLDDFFWVGGDDDPLHPFLADGLLAMVNRRRKTPFHFASKPWWQQPLYIVLMREGVYVACCGSVENGLLVIHPYSRDFHRSAQYRLHQDAEVVGQIVGIMRRFS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |