Scaffold Ga0302325_10004333

Overview

Basic Information

• Taxon OID: 3300031234
• Scaffold ID: Ga0302325_10004333
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32870
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003754	Metagenome / Metatranscriptome	470	Y
F027471	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302325_1000433319	F003754	GGA	MLLQRQRQNEKHYLYIQLASKQGFMIVDVSKPEKPNLLKRTAESNQATTGNLEIVSPDVAIAETPERTATTLTSSSHPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGGHGLIYLTNNEGLWILRYNRPALLEPSKKKPPCDSESEIMAMPPDCD
Ga0302325_1000433330	F027471	N/A	MDHSYRAALSGNGNGQGARRGPRPGFAAPFAPVDPEPLPALREDSNSRIFAFVDDLFFAAKNQET