NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302307_10462831

Scaffold Ga0302307_10462831


Overview

Basic Information
Taxon OID3300031233 Open in IMG/M
Scaffold IDGa0302307_10462831 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018461Metagenome / Metatranscriptome235Y
F085525Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0302307_104628311F018461N/ALTASVQVTTSGQPSDQLDAATAADGAPVAVYHQQVNVGELPDLSGCGAETPSPVVVDTWLHYGPLLIPGRSGGASPPATATLTVQPGSALPPGTSLAITFYFAHAGSVTLRLPVSRA
Ga0302307_104628312F085525N/ALSYDVDHEDALLYIDAAGRVRFVVVGAPDASGAPVAPALRRFLSAQGRADLSHPDASTWTAAEALSPIAWLTGRPVRPAGS

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