Scaffold Ga0302323_100560642

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302323_100560642

Scaffold Ga0302323_100560642

Overview

Basic Information
Taxon OID	3300031232 Open in IMG/M
Scaffold ID	Ga0302323_100560642 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1233
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020185	Metagenome / Metatranscriptome	225	Y
F097423	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302323_1005606421	F020185	GGA	MSRKNLFLLVGSGLLLVGVGCGIAVQRDLSAIPPGQVGFDDMCGLQEYFDALEIKSTPPPRIVSALDMEGQSGGKPQRGGKERFAFDSEFLLKHLRRVLNENWRRLPEPIATATNIEIEVRWSEKAGTKRVVTDQESELIVGSQSWPLPYQPCLSELLYGAPLYRQRREMWGLPLPGQHADGGADAEPPPISTGPLVGGGGDAGAADAARAH
Ga0302323_1005606422	F097423	GGA	MERLRELRGPDTRERDLANILGFEHSRAVRWKEGQMYVDRAEYLVRLADALDVETMLLVAMASGTLTVEQAH

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