Scaffold Ga0170824_126578320

Overview

Basic Information

• Taxon OID: 3300031231
• Scaffold ID: Ga0170824_126578320
• Source Dataset Name: Coassembly Site 11 (all samples) - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3351
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007465	Metagenome / Metatranscriptome	350	Y
F009513	Metagenome / Metatranscriptome	316	N
F017774	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170824_1265783201	F017774	N/A	TDMLNKHRESLDAQYKAGIRIIEEAFKVGEAKDPQQFRHFTEELWKHSFECLKTVAEAQTRDVQAAMEKFYEVASKSASGLKV
Ga0170824_1265783202	F009513	GAGG	MFDVILENYRKATESTMKLQQDVLRNWTMQWPQMLPQMFGAQTFGLPSDPGIPPMGGPASGSAMPGAAWLEQLSDAQKKWGQTVTDMLNKHLESLDAQYKAGIRTIEEASKVIDAKDPQQFRRFTEELWKHSFESLKTVAEAQARDVQAAMQKFYEVASKSASGLKV
Ga0170824_1265783204	F007465	AGGAG	MPSTESETEPDSSVATTDPSTIIASFWTQWLEQSSRGTQALLEAMQGVGDPQQLHRRWLDAVSRSLDDFMRTPAFLQLVGNNLKAVTDLKGMQDQVIQDTARQFGLPLAADITGLFERLHSTEQNIINRLQAIEERLKAVETKH