Scaffold Ga0307497_10218068

Overview

Basic Information

• Taxon OID: 3300031226
• Scaffold ID: Ga0307497_10218068
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 836
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030276	Metagenome / Metatranscriptome	186	Y
F068803	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307497_102180682	F030276	GGAG	MTNFARLDSDRPEISRLVIAMLQAREALALQSWSHPLEYTGEDWWADVLADPRARRIARGAPGAITIYRLRDEQRATILVSCSKCDWRAAYSRDELIAKHGADCPMPDLLHRIAAPGCPRLGSTWDRCGVYYVQPIEAPGK
Ga0307497_102180683	F068803	N/A	VEMKVAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRKMLVEARKKKLSAGLKARREQR