Scaffold Ga0307982_1023865

Overview

Basic Information

• Taxon OID: 3300031224
• Scaffold ID: Ga0307982_1023865
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3470
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006817	Metagenome	364	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307982_10238656	F006817	N/A	WVDDIEYYVVLPIGLYEISDTKSYFQFVMSQNNHVMTNTETGSTIYFIDFVVSNIAYSIDILTYPVPASLPTGFTSSITFIETEKNPRLTLPSGINAIFGYAEDFTTDAGSSILTFNSSLAPNVSPDNSVLIVCDQVENELSNLGILYALSPSVGISSLIVDKPAYPIYSELRNGSYNHLNFRILSSKTFRPIELIDPEINFIFSIK