Scaffold Ga0307982_1018672

Overview

Basic Information

• Taxon OID: 3300031224
• Scaffold ID: Ga0307982_1018672
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4286
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009455	Metagenome	317	Y
F032165	Metagenome	180	Y
F093000	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307982_101867211	F093000	N/A	METQSIFKYTTERNGIHFIPRDKIEQFKKDPLFKNDEINEKLKADAYGLMPILIINPK
Ga0307982_10186725	F009455	N/A	MCPFIYINIFFSFDMYLEQVELSISPAQMTKIRKGLPIQISHGSMGNGDVVVFLHPENAKKMMSTFKRGKGLRMKMDEDEVRASGLLDGLKKIGEKVEKSVVDVGNKVAKPTKKVISQIPKSIRDVLQDEAQ
Ga0307982_10186728	F032165	GAGG	MKGGRGRKGSMVRPASDMPTFSPYATLYSAQNHLFKPQSSFQNGGNGELIM