NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307982_1013080

Scaffold Ga0307982_1013080


Overview

Basic Information
Taxon OID3300031224 Open in IMG/M
Scaffold IDGa0307982_1013080 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5624
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048561Metagenome148Y
F068475Metagenome124Y
F093309Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0307982_101308011F068475GGAMVNIENKTGDPITEHKVDILERFNPNMVIGRGVGRQMMIQNMRYK
Ga0307982_101308015F048561N/AMQNFYDKKEVKKYCVKADNPNYDLHHFDTPFRSLVVAPSGSGKSNFITNLINIFCKGKGTFEEIFFL
Ga0307982_101308016F093309GAGGMAGNNNPDLLRKFKIVLLKMKNNKLISLQEYNEVLNILLELDIKKKL

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