Scaffold Ga0307981_1014329

Overview

Basic Information

• Taxon OID: 3300031223
• Scaffold ID: Ga0307981_1014329
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #987
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3827
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017336	Metagenome / Metatranscriptome	241	N
F024964	Metagenome	203	Y
F065935	Metagenome	127	Y
F067452	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307981_10143292	F067452	GAGG	MTKQAFGNPEQFNLYKMYKMTTKTRSEIMTKKTRSEIGREASAYFAPNWHLCQNYTENGSFLTVYKNIKTSIHKNGQQSTIVECNLYRTNAIVTDWLQVLSNPLRLFRGLNDCKHYLLHPRQATFYTYTKGTK
Ga0307981_10143294	F065935	GAGG	LIDESNESNKLYWTLGYEAGIDLERERIIKVFQAKEARRTIIEALEYPYTAQELEDTIREGQDD
Ga0307981_10143295	F024964	AGGA	MIDMADMSGKILWTKGREAGIEAERERISKMAEARICFDFHNSGACDHSVCYGMAELIITIREAKVD
Ga0307981_10143297	F017336	AGG	MTRACVISHKSPMEANYGLLCAMCYDGLRSALQGAPNALQHLREIYVMRSPMELDTPKPLKKDPPAPFNLDAWQLAEDMWQALTGGYIPVKWNHFQIYGKAKEICQALHQDIDNLVNRKEVIYLMPLVKTLGQALYRYPLEEKSRTTLLPCPSCNLKTVYSPPSEFGDDLQVKCHSCGFVIPPEKMAFYANLAERERA