Scaffold Ga0307972_1056002

Overview

Basic Information

• Taxon OID: 3300031222
• Scaffold ID: Ga0307972_1056002
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #780
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1969
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008469	Metagenome	332	Y
F025890	Metagenome	199	Y
F100125	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307972_10560021	F008469	N/A	LNCPLPLRRTHPPTLVCCVCVFAAMGVTSTKSGRLEVNLSLSGKRGGKIHLGTNLLSAVSGIWRFGMIIRSLLPISLETMHGPKEPVSLIAFKIMRHAKLCLSVIMFLICVCWHLKRMCMTLSTCEQRGQV
Ga0307972_10560022	F025890	GGAGG	MGHVCCMGMIMGLCLVFYVFFCKPVDVVEGISLRACYSDGSVSDDGVGGG
Ga0307972_10560025	F100125	GAG	MVNGMADGEPRKLGGEGIGVCPKHFVPWVLTPVMGEFGVIVEGGCHFFFSDQGP