NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307948_1015150

Scaffold Ga0307948_1015150


Overview

Basic Information
Taxon OID3300031221 Open in IMG/M
Scaffold IDGa0307948_1015150 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #280
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5096
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025890Metagenome199Y
F028986Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0307948_10151504F025890GGAGGMGHVCCMGMIMGLCLVFYFFFCKPVDVVEGITLRACCFDGGVCNVRVGGG
Ga0307948_10151505F028986N/AMGVTSTKSGRLEVNLSLSEKRGGKSHLGTILLSAISGIWRFCMVISSLLPISMEAMHDPKEPAFLKALRIMRHAMLCLSVIMFLICVCWHPERMCRALSTCGQRGQIRLVESF

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