Basic Information | |
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Taxon OID | 3300031221 Open in IMG/M |
Scaffold ID | Ga0307948_1008257 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Organic Lake, Antarctica - #280 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7518 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Organic Lake | |||||||
Coordinates | Lat. (o) | -68.4561 | Long. (o) | 78.1899 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000607 | Metagenome | 992 | Y |
F001038 | Metagenome | 796 | Y |
F002411 | Metagenome | 561 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307948_100825711 | F002411 | GGA | MVIRLLLPISLEIMHDPKEPVLLIALKIMRHAKFCLSVIMFLICVCWRPERMCRALSTCGQRGQV |
Ga0307948_100825713 | F001038 | N/A | SLRIKTQFLERLQSVSVVDGATHTQKDDVESNGGSLENVAEISVLFLCGVHLVLRSGVFTMLDLNEVDVTPRFAKVFMSMLSGVGVSTGGWRCC |
Ga0307948_10082575 | F000607 | AGG | MDKFSSKFHRVHMELGGKLLKSLRIKTQFLERLQSVSVVDGATHTQKDDVESNGGSLEKVAEIFVLFLCGVQLVLRSGVLTMLDLDEVDVTPRFAKVFMSMLSGVDGSTGSWRCC |
Ga0307948_10082577 | F002411 | GAG | MVIRSLLPISLETMHDPKEPVLLIAFKIMRHAKLCLSVVMFLICVCWRPEKMCRALSTYGQRGQV |
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