Scaffold Ga0307973_1005956

Overview

Basic Information

• Taxon OID: 3300031219
• Scaffold ID: Ga0307973_1005956
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #782
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3006
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Assiduviridae → Nekkelsvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086405	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307973_10059561	F086405	AGG	LFLYIVRVRYFMGWMDLLRFRKKETVDKKVFKLNLGDGIEILTYEELRYRFDNLTKKEQDYLNKNARKCPNITDINLD