Scaffold Ga0307980_1011251

Overview

Basic Information

• Taxon OID: 3300031216
• Scaffold ID: Ga0307980_1011251
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1060
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2414
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024964	Metagenome	203	Y
F057145	Metagenome	136	N
F074457	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307980_10112512	F074457	N/A	LPSYLLHLHKRDKMSINELIATNGKVWYKAGQLAERHRAIRLAQHISVPSEPAIGQPREMVFLDDLIAYLADEDEK
Ga0307980_10112513	F024964	AGGA	MIDMKDMSGKILWTKGYETGVEAERERISKMAEARICFDFHNSGVCDHSVCYGMSELIITIREAQDD
Ga0307980_10112517	F057145	N/A	MSKNTRLLRTAAESTLDALELLSYTEGFEAATNALDELSDIKHNFDEQQVAEILRWAAKELRGENVN