Scaffold Ga0307935_1017487

Overview

Basic Information

• Taxon OID: 3300031215
• Scaffold ID: Ga0307935_1017487
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1441
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001408	Metagenome	702	Y
F008116	Metagenome	338	Y
F020291	Metagenome	224	Y
F102224	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307935_10174871	F008116	N/A	AQITRIQNAGGTIEDTSVIDADIKFLKSIGLFANLKYAVDPRAGITQRVDGSDIFASKIFDYSGSDADTANATGSEQPKKGILNGITALDFDGDNDKLTNTDTVSFLAGEEMFSVAVFAQDFTDGDIFGMVVDKFSPNRPRKAFGRNESNIEVFSDATQSNTPYQNTQIIASGTCDTDDLLTGFVNGGQISQSTRAVNYIGKSLGNIRNLNTRLAKAKFQKNWDFNALPTLSQAAAITDYLQAQFNITF
Ga0307935_10174872	F020291	N/A	MYYKGTKQECAAYNIEVYNGTSSMKQDPFTTSYASIQEIEGRFYILKHKDFNSNMEEVNELPIDLTNTEI
Ga0307935_10174873	F001408	N/A	MKKFKAYLKRTRHHLHAIVGITGGFLASLSLSWVWIGFRNLDSLDKAMWFLAPAFIIGLIWEWRQGKINKMDILVSGIAICLGVYLGGLLF
Ga0307935_10174874	F102224	N/A	MSIFSENLGVIITGITGAIGGIAAFFGGKKSRESNANLEIGKAYELMAKQNNAFLEVMTTKVD