Scaffold Ga0307935_1000493

Overview

Basic Information

• Taxon OID: 3300031215
• Scaffold ID: Ga0307935_1000493
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17544
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007738	Metagenome	345	Y
F033324	Metagenome	177	Y
F054612	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307935_100049317	F054612	GGTGG	LERANEEPDFPELLFRAYLAEWLMDVGPVMQGGMGPVALSHLEIQAWAANVGLRFEGDEAQWLQKMSGVYASELFESNGKNTPQPFRE
Ga0307935_10004938	F007738	GGAG	MAGASIAAEVALAYDEAGIAAGNGTGAPIVTISRPGEPTGPAWNPTPGAPVVHTFTAKPAAKAYTQRTGLALGAGELVYSLVNDGVTITPSTSDVLTIDGINWPVQEVIVMDSAGYVISWLVKVAK
Ga0307935_10004939	F033324	AGGTGG	MTDTAKRMMDAAKTEAMFAAAHAALDIESRKATLLAAVRRLHYDASIAQGFSPEDALILCMDCLAQE