NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1100738

Scaffold Ga0307974_1100738


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1100738 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F002411Metagenome561Y
F049331Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_11007381F049331N/APKLWYLPNHRDALQAHMHFLHKLGNAKTEANYHAYYQTLIKDGTDNGATSNAYLTPSKVSFKTKYIIMK
Ga0307974_11007382F002411GGAGGMVIRSLLPISLETMHDPKEPVLLIALKIMRHAKLCLSVIMFLICVCWHPERMCRALSTYGQRGQV
Ga0307974_11007383F000607GAGMELGGKLRGSLKIETQFLERLQSVSVVDGAAHTQKDDVESNRGSLENVAKVFVLFLCGVQLVLRSGVLTLLDLDKVDVTPRFAEVFRSVLSGVGGSTGGWRCC

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