Scaffold Ga0307974_1021819

Overview

Basic Information

• Taxon OID: 3300031211
• Scaffold ID: Ga0307974_1021819
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #784
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3675
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087964	Metagenome	110	N
F089594	Metagenome	109	N
F104106	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307974_10218191	F104106	AGG	VYLVSYRIDDIDMLGGRSDFSCERLCCMVVVASDL
Ga0307974_10218192	F089594	GGA	VASWLVAAGSESQVIAVVCGNDIGDVLIELWFLFVWLDTLCE
Ga0307974_10218193	F087964	GGA	VSSVVSAKFPFVVKVEALPPLWRGSVVFGEAQCGICCHVLCVSWVVYLILYIGG