NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1018423

Scaffold Ga0307974_1018423


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1018423 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4177
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025624Metagenome201Y
F087964Metagenome110N
F104106Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_10184232F104106GGTGGMVCNLKGWVVVYLVSYRVNDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307974_10184235F025624N/AMRVDNSTGKGTSSMDKFSSKVHRVHMELGGKVLNSLRIETQFFERLQSVGVVELL
Ga0307974_10184237F087964GGAVSSVVSAGFPFVVKVEALPPLWRGSVVFGEAQCGICCHVLCVSWVE

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