Scaffold Ga0307974_1000822

Overview

Basic Information

• Taxon OID: 3300031211
• Scaffold ID: Ga0307974_1000822
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #784
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20167
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002904	Metagenome	522	Y
F008469	Metagenome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307974_100082217	F008469	GGTGG	VAGGAAEVLPVSLNCSLPLRKTHPPTLVCCFCVFAAMGVTSTESGRLEVILSLSGKRGGKSHLGTILLEVVLSAVSGIWRFCMIICLLLPMSMETTHDHKEPVLLIALKIMRHAKLCLSVIMFLICVCWHPERMCRALSTCGQRGQV
Ga0307974_100082218	F002904	N/A	MRVDNSTGKGTSDMDKFSSKVHRVHMEFGGKLLNSLRIKTQFLERFQSVSVVDGATHT