Scaffold Ga0307974_1000688

Overview

Basic Information

• Taxon OID: 3300031211
• Scaffold ID: Ga0307974_1000688
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #784
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21644
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (41.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002411	Metagenome	561	Y
F010069	Metagenome	308	Y
F025890	Metagenome	199	Y
F080721	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307974_100068810	F025890	GGAGG	MGHVCCMGMITGLCLVFYVFFCKPVDVVEGISLRACYSDGGVCNVRVGGG
Ga0307974_100068811	F002411	GGAG	VVIRSSLPISLETMHIYKEPVLLIALNIMRHAKLCLSVIMFLMCVCWHPERICRALSTCGQRRQV
Ga0307974_10006884	F080721	GAGG	VLFLRNAQLFLRSSVLTVLDEANFTLENAEIFGLVLSGDGSAGGGWRYC
Ga0307974_10006887	F010069	GAG	MVINGMADGEPRKLGGEGVGVCPKHFVPRVLTPVMGEFGVMVKGGCHFFFSDQGPLLKDGGDVEGEYPCKRVFGFIVRMFRGRGVFTCNEAYKF