Scaffold Ga0307931_1009671

Overview

Basic Information

• Taxon OID: 3300031208
• Scaffold ID: Ga0307931_1009671
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4391
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006817	Metagenome	364	Y
F009989	Metagenome	310	Y
F010055	Metagenome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307931_10096711	F010055	N/A	MHHFDTPFRSLVVAPSGSGKSNFITNLISLFCKGKGTYDSIFIFCKSRDEPLYQFLGDKSKGLIEIHESLEKLPALNDLKPSEQTLIIFDDMVNDLKKHPIISEYFIRDRKRGC
Ga0307931_10096713	F006817	AGG	MSDIKSYFQFVMSQNNHATTNTETGSTIYLIDFVVSNTKYSIDILTYPVPASLPTGFTSNIGTENNPRLKLPSAINEFFGYEKEFIMDAGSSILSYSSTIALNVSPNNSTLIICDQVENEFSNLGILYAISPSVGIGYLIVDKSAYPIYSKLRNGNYNHLTFRILSSKTFRPIELIDPEIILYFMLNKYV
Ga0307931_10096717	F009989	N/A	MKSQDKQYDSVLNKREWLYINDTVTTYDQGTSIIETTSLSNNSKFLDYNSAYLSVPLLITLTPYGASNTAISTAMPCMKAVSFKQSFLSMINSITVDLNGQYMIQQNQLIDIYNHFRFLTSESWTSQNQWSTIGFYPDVSETGGFATANSNFALATTTSNNSNLNIGLSERLQYIVDDTGETLDGIATSSLSNLISKTELSKL