Scaffold Ga0307496_10060458

Overview

Basic Information

• Taxon OID: 3300031200
• Scaffold ID: Ga0307496_10060458
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 662
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Fulvimarina → Fulvimarina pelagi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.0822
  • Long. (^o): -123.061

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029132	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307496_100604581	F029132	N/A	RVALAALAEEHQGEAALLVVVAPDLGQPEPLAEEVDRGRQVADADHRMQVAHRRFVSRFWIILRAMSEPNVLVNFRLDRDHPMRIKWLATDGVPGDGYKAQVTVIKLDDGATLEMDSSAILEQTAPDPTGGIGAYLVTFNGMVGFASDHPDRTRIDKLEDEQIDYDMVFIREHDGRTAVEGEDYEIRDRPRGMAHKLTRRNA