Scaffold Ga0307496_10024789

Overview

Basic Information

• Taxon OID: 3300031200
• Scaffold ID: Ga0307496_10024789
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 893
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.0822
  • Long. (^o): -123.061

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005485	Metagenome	399	Y
F089481	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307496_100247891	F089481	N/A	DVPEPGRTKQVEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLDNKLMEYYSEPMIKDLREAAGATGSSPTPPASSR
Ga0307496_100247892	F005485	N/A	MKCPACCSEIDDRSYRCRECHGLCSYRRLCWRYRYIVFGIVALIGFWTVRGYVGRWFANDYDELPEGALVSDATTLSWLGLTDKGWFCEEPHYKGRLLHLRHKVFQPKDVIIFVHGFIGDYVHTWGKPKVLLDDPRFNRNYDFVFYGFETALFGDVPAFDEEAAKLDRILTHLDEDYKSITIVTHS