NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308023_1023392

Scaffold Ga0308023_1023392


Overview

Basic Information
Taxon OID3300031167 Open in IMG/M
Scaffold IDGa0308023_1023392 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #418
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1251
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092747Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308023_10233923F092747AGGAMSTENKDVSVKYFKLMGYYNINDVKYDLLKIIAPYDGYMYNEKETNQLISVFNSYLGDLKGSYKIFSYEIVPTEKENAITFDIQIKMQKDRSPKKLKIHVGKIDLTRYMGTPETEETNA

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