Scaffold Ga0308023_1003186

Overview

Basic Information

• Taxon OID: 3300031167
• Scaffold ID: Ga0308023_1003186
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #418
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4043
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005816	Metagenome / Metatranscriptome	389	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308023_10031863	F005816	AGGA	MDLSNYKIDDASTGGGSKVEPGRYVLHWAGEEAELVEGRNNWRGCKMYFEVDGAGITLNHTFTVGHDNPKFVDSGVNSMMLMAKAMGLKEAPADTTKQFMGKSVSAELIKDDNGYLKINEDWGKTWQPADKKAAPVREEKIQAGPSAEDLRRAEESNDDNVPF