NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308023_1000093

Scaffold Ga0308023_1000093


Overview

Basic Information
Taxon OID3300031167 Open in IMG/M
Scaffold IDGa0308023_1000093 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #418
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26227
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (12.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003058Metagenome / Metatranscriptome510Y
F023447Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0308023_100009326F003058GAGMTENEMNRIAEMVVDKIIARQKAHDEEFKAEIQSMVDDDAEIEFGTITEDEIMADEIIKLNNRLSQLEENEDYEAARIVANKIKHLKNKYNL
Ga0308023_100009339F023447N/AMETQAFMGTGELIPRLMAQVGSASFGMALAKKNGFFNPDGSMSDLGIARNGMDAKGRAIDRAGGTGIYNRYTNRVTQSA

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