NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308023_1000077

Scaffold Ga0308023_1000077


Overview

Basic Information
Taxon OID3300031167 Open in IMG/M
Scaffold IDGa0308023_1000077 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #418
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29164
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F015148Metagenome / Metatranscriptome257Y
F018560Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0308023_100007711F015148N/AMNWDTPPEYKEHECSECGTPIDNAGVCSGACHEASML
Ga0308023_100007726F002629AGGMIVNEAAWKQLKEQIEYHTKSDTSISDISINYQVKKAKNRNYLRLNITTDD
Ga0308023_100007742F018560N/AMKSTRCIKTNKDHYILIINDVSVGVLERSELRNLIKIIDNEI

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