Scaffold Ga0310841_100025

Overview

Basic Information

• Taxon OID: 3300031146
• Scaffold ID: Ga0310841_100025
• Source Dataset Name: Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 335824
• Total Scaffold Genes: 322
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 209 (64.91%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Plant Biomass → Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.8406
  • Long. (^o): -122.2901

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064527	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310841_100025315	F064527	GGAG	MTRDPADRIRTLLLRADNLLKNEGDPDERRARARTALEEAREIAADPSVEPRVRELVERRLEMLGS