Scaffold Ga0308025_1230602

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308025_1230602

Scaffold Ga0308025_1230602

Overview

Basic Information
Taxon OID	3300031143 Open in IMG/M
Scaffold ID	Ga0308025_1230602 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	621
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5596	Long. (^o)	77.8957	Alt. (m)		Depth (m)	37
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040871	Metagenome / Metatranscriptome	161	Y
F096068	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308025_12306021	F096068	GAGG	MAYLEDVVLFCKKELNIPDEILVSLETEDLSEDNVKGWTTDSAEDDEYDIEIDTHLGFKEAIITVCHEMVH
Ga0308025_12306022	F040871	AGGA	MSTMERLDLLNEKMKQMGMMGQWYQRYDISTNAQECKQIIKELKEELDPPCGMSHK

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