Scaffold Ga0308021_10004509

Overview

Basic Information

• Taxon OID: 3300031141
• Scaffold ID: Ga0308021_10004509
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #351
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6163
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042625	Metagenome / Metatranscriptome	158	Y
F078539	Metagenome	116	Y
F091752	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_1000450910	F042625	GGAGG	LTDSKAEKDSLWKELKTSWSVLKRESGADEVAKGKAKERINEIQEKLKLDKTDWNTPRSGPPGSHLTKAGASSNPSDKLLIEKVLGTVLDAKRILAEEFITLNQRLTTLEKMMESCGCKCASTDCCPTTETPHD
Ga0308021_100045092	F091752	AGG	MSQILQAQTEFMPENIKWLGLGNKYLENQYDTVDNWGEKGLVDKVDSDKTFLTEYNFVLDNMSLR
Ga0308021_100045095	F078539	AGG	MTKPLSDRENFLIASVVMVVSDRMKTVNRETRMNILQFIREKKYPAVTDKDWKEIAAGIDNHKKDVFGVLIKAFHESSSNPSVSSDRAFANLDADMKDEVDHIDFEELRAVVEDSDDPKLREYYLTMKQLKRDFDEDREKKF