Scaffold Ga0308024_1000345

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1000345
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19376
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100034529	F005796	GGAG	MLELAVLAFCMIGCGLHCHALGKQQGIEATVEHLIEEGLLEVDE
Ga0308024_100034530	F084734	N/A	MKKYKRKPWTDDERKLLAAHYFYQDIESMMYMLPGRTEQSIRNQVAYLRKRGYRFKT
Ga0308024_100034532	F025150	GGAG	MINVYTENKALDKFGTFIDECVVSLFPTDATYDIYFELLKFVDTKEEHDCVPGTHAGFCIGDEVEAVVSLATHWVMDGEEIAYEDHELASNIAHELVHAKQFCRGQINMVDNVWKHNKEVIDCDHVDYMDLPWEVEAYGYETILTDLLWENV
Ga0308024_100034535	F047922	GGAG	MTPQEIVDHKRKWIPYSDYDTDAHTDLRRAVREWCKDHCFQWRYDIKEFTDVYFDTVRFELEEDFTAFNEWYIGVWERD