Scaffold Ga0315837_1035988

Overview

Basic Information

• Taxon OID: 3300031136
• Scaffold ID: Ga0315837_1035988
• Source Dataset Name: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T16 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 601
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.7417
  • Long. (^o): -117.7042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056350	Metagenome / Metatranscriptome	137	Y
F060948	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315837_10359881	F056350	N/A	QRTYFNLNIGNLIKYFSILTVAFHDIHSLFGFCILLVVFSQLVSGTMLSFSLVPESMMVPIVRDEEDLEDLYADDFFWIHERGVDLLFIFSWLHLCRKLYINAFEYEHEIA
Ga0315837_10359882	F060948	N/A	MILQVVTFFGLVLCCTHLSEITLTIAANVVHTVFLFHGKFYWWIFTDKNLNTDTLIRLAYAHYLSAFYMAYLGLLHGIDM