Scaffold Ga0308160_10001273

Overview

Basic Information

• Taxon OID: 3300031132
• Scaffold ID: Ga0308160_10001273
• Source Dataset Name: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLF.R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36858
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (81.40%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081964	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308160_1000127323	F081964	GGAG	MPTECYRDQIIRAVTGNKPAMVFHVVDGAALRRLSERLSEAERAATILQAKGYGASGLLLDEVAARVPNAAG