NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170823_11610943

Scaffold Ga0170823_11610943


Overview

Basic Information
Taxon OID3300031128 Open in IMG/M
Scaffold IDGa0170823_11610943 Open in IMG/M
Source Dataset NameOak Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F089186Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0170823_116109431F089186N/AAGEAVDTFYGAMRKHYPYTDKLIDSFIAHTKADQKLGHADAFLLMCQSVPPLTRREVNDALNVAKNMAEHLLLFMDGIDTFYGRFATVPRLPCDPKSE
Ga0170823_116109432F007671GGAMRRLREMSGGGPFTAPEDIRRVIDNYAYLDDWRTDYRIQSVRSSLNSSRITCIDGAILSYGLLELLFPSTKRRLLAIHRRDPAKDEECGHCVTLYWNADGRVGSFSKSSFKGLGHRDAIYADETAIATSYGEAYIEMGFEPLYFGVSRLEDAAPDIDWRLDEGALNEISNRLQATYEYGFMVGS
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